Ah! Plenty of advice already if you pop the word 'groundsheet' into the search box. I would have thought that there would be some kind of wax/cream that you could rub into the groundsheet (on the outer side). The extra protective layer is worth considering, either on the inner side of the groundsheet, or on the outer side, but it seems that water will get between the two anyway.
I'd think that if it were on the inside water will seep up anyway from the edges, and if underneath then rainwater will get between the two and seep up 'as before'. No easy answers. My tent has been dry as a bone in a torrential all night downpour (Oct 2006) - but found a big puddle in one corner (June 2007) during rain, with the foot of my sleeping bag in it.
Perhaps the angle of the rain, or pitch of the surface has something to do with this. But a tip I learned is to fold sleeping bags over on themselves, and perhaps put them on top of a rucksack when leaving the tent, so (in my case) the feets are not vulnerable and they are 'high & dry'.